Examples

This section contains examples of ciclope pipelines.

The trabecular bone micrCT dataset used in the examples is part of the public collection of the Living Human Digital Library (LHDL), a project financed by the European Commission (grant ID: FP6-IST 026932 ). Human tissues in the LHDL project were collected according to the body donation program of Universitè Libre de Bruxelles (ULB), partner of the project. For info on the dataset see here .

You can run all Jupyter notebook examples on your local machine. You can also execute the pipelines from the command line. The header of each example shows the shell command to launch the pipeline as a script.